PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_575C5670C.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 221aa    MW: 24608.7 Da    PI: 7.1574
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_575C5670C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.84.7e-1067138182
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                            +fYn Y+ e GF +r  ks+ + +++   +++ vC ++gk+++e+++         + r++C a++ + +++d+ w++t+ +
  Traes_3DL_575C5670C.2  67 DFYNLYSWEHGFGMRYGKSRLNAEKT-KCMQEVVCGCSGKPTKENSR---------SCRCECPAMISLLRTSDNGWYITEHR 138
                            6*****************99995555.678899*******9997666.........99********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-767138IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
LLWEITRNKF WSVCRIRVGN QPPGRAPCPE RVGVLEQTIR GYADKLGDHV VEPAIGLTFD  60
SLCESYDFYN LYSWEHGFGM RYGKSRLNAE KTKCMQEVVC GCSGKPTKEN SRSCRCECPA  120
MISLLRTSDN GWYITEHRAN RKPCFDADMW GEGYGCSRLY RDIRNSDTQE VDTGCKGCFA  180
ATPEGVPAGS CWGQDDDKSA HNTLCARDGI GTTRGCISGS I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-111HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231467.15e-51PREDICTED: uncharacterized protein LOC104582684 isoform X2
TrEMBLW5DA331e-165W5DA33_WHEAT; Uncharacterized protein
STRINGBRADI2G27040.11e-50(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-08FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]